*Note: I'm the author of stack.PHP.*

You're likely running into [rate limit](http://stackapps.com/questions/1143/request-throttling-limits) issues. The API only allows you to make som many requests per second. Quoting from the question I linked to:

 > The API will cut you off if you make more than 30 requests over 5 seconds to any single endpoint.

Based on past experience, what you need to do is make sure that there is a 100ms delay between requests (I know, that's nowhere near 30/s but there have been issues with that in the past).